PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G269300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 361aa    MW: 39449 Da    PI: 7.978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G269300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.9e-15276301126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +ktelC+ +++tGtC+yGd C+FaHg
  Glyma.10G269300.1.p 276 FKTELCNKWQETGTCPYGDHCQFAHG 301
                          79***********************8 PP

2zf-CCCH18.34.1e-06314338125
                          --S---SGGGGTS.--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                          ykte Cr  ++ G  C+yG rC+F H
  Glyma.10G269300.1.p 314 YKTEVCRMVLA-GvVCPYGHRCHFRH 338
                          9**********.66**********88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.7E-19271308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11272307IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004275303IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11309342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-8309343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803313341IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4313340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MHNKDACSPS SNGGFGGGAS AGQIPSTGGL YSSLYSALSN ENLPSLSASC SNGSGGGVSM  60
YPYSESIQKH QDMVNRQSMC LNRLVETSKE VEALREENGL LRAANKELQK QLHLVIQASL  120
ENHYGGGDGG SSGQTQPTLF NVLHGFRGLH IGEGNKENYA DWNNNNLNIM NNNNSNNKEL  180
QEISEESPTS VIENNNVVEV ERFSLPKSIS VRSNGYLKTA QSAALAPNNS NATRNKGATR  240
PRASATPPEP VQKVYVRGGQ KEEEPLEMIV YNQGMFKTEL CNKWQETGTC PYGDHCQFAH  300
GIGELRPVIR HPRYKTEVCR MVLAGVVCPY GHRCHFRHAL TEQEKAVVSQ PKPRSMKLER  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22276342470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-144AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535712.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F57e-83C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLK7LLP50.0K7LLP5_SOYBN; Uncharacterized protein
STRINGGLYMA10G41531.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-79C3H family protein